Philipp Treutlein Thesis Statements

1. Hendricks JG (1987) The Gondwanan Cycas. Encephalartos10: 24–25.

2. Chamberlain C (1919) The Living Cycads. Chicago: University of Chicago Press.

3. Loconte H, Stevenson DW (1990) Cladistics of the Spermatophyta. Brittonia42: 197–211.

4. Norstog KJ, Nicholls TJ (1997) The Biology of the Cycads. Ithaca, NY: Cornell University Press.

5. Brenner ED, Stevenson DW, Twigg RW (2003) Cycads: evolutionary innovations and the role of plant—derived neurotoxins. Trends Plant Sci8: 446–452. [PubMed]

6. Norstog KJ (2003) Foreword In: Donaldson J, editors. Cycads: Status, Survey, and Conservation Action Plan. IUCN/SSC Cycad Specialist Group. IUCN, Gland, Switzerland, and Cambridge, UK: pp. 3–8.

7. Hermsen EJ, Taylor EL, Taylor TN (2009) Morphology and ecology of the Antarcticycas plant. Rev Palaeobot Palyno153: 108–123.

8. Osborne R (1995) The world cycad census and a proposed revision of the threatened species status for cycad taxa. Biol Conserv71: 1–12.

9. Stevenson DW (1990) Morphology and systematics of the Cycadales. Mem N Y Bot Gard57: 8–55.

10. Rai HS, O’Brien HE, Reeves PA, Olmstead RG, Graham SW (2003) Inference of higher-order relationships in the cycads from a large chloroplast data set. Mol Phylogenet Evol29: 350–359. [PubMed]

11. Bogler DJ, Francisco—Ortega J (2004) Molecular systematic studies in cycads: evidence from trnL intron and ITS2 rDNA sequences. Bot Rev70: 260–273.

12. Chaw SM, Walters TW, Chang CC, Hu SH, Chen SH (2005) A phylogeny of cycads (Cycadales) inferred from chloroplast matK gene, trnK intron, and nuclear rDNA ITS region. Mol Phylogenet Evol37: 214–234. [PubMed]

13. Osborne RM, Calonje A, Hill KD, Stanberg L, Stevenson DW (2012) The world list of cycads. Mem N Y Bot Gard106: 480–510.

14. de Laubenfels DJ, Adema F (1998) A taxonomic revision of the genera Cycas and Epicycas gen. nov. (Cycadaceae). Blumea43: 351–400.

15. Smitinand T (1971) The genus Cycas Linn. (Cycadaceae) in Thailand . Nat Hist Bull Siam Soc24: 163–175.

16. Hill KD (1995) Infrageneric relationships, phylogeny, and biogeography of the genus Cycas (Cycadaceae) In: Vorster P, editors. Proceedings of the Third International Conference of Cycad Biology. Stellenbosch: Cycad Society of South Africa; pp. 139–162.

17. Hill KD (2004) Character evolution, species recognition and classification concepts in the Cycadaceae In: Walters T, Osborne R, editors. Cycad classification, concepts and recommendations. Wallingford: CABI Publishing; pp. 23–44.

18. Wang DY (2000) Studies on morphology, anatomy, taxonomy and evolution of Cycadaceae. PhD Thesis, Nanjing Forestry University, China.

19. Nagalingum NS, Marshall CR, Quental TB, Rai HS, Little DP, et al. (2011) Recent Synchronous Radiation of a Living Fossil. Science334: 796–799. doi: 10.1126/science.1209926[PubMed]

20. Treutlein J, Wink M (2002) Molecular phylogeny of cycads referred from rbcL sequening. Naturwissenschaften89: 211–215. [PubMed]

21. Crisp MD, Cook LG (2011) Cenozoic extinctions account for the low diversity of extant gymnosperms compared with angiosperms. New Phytol192: 997–1009. doi: 10.1111/j.1469-8137.2011.03862.x[PubMed]

22. Salas-Leiva D, Meerow AW, Calonje M, Griffith P, Francisco-Ortega J, et al. (2013) Phylogeny of the cycads based on multiple single copy nuclear genes: congruence of concatenation and species tree inference methods. Ann Bot112: 1263–1278. doi: 10.1093/aob/mct192[PMC free article][PubMed]

23. Amaral AR, Jackson JA, Möller LM, Beheregaray LB, Coelho MM (2012) Species tree of a recent radiation: the subfamily Delphininae (Cetacea, Mammalia). Mol Phylogenet Evol64: 243–253. doi: 10.1016/j.ympev.2012.04.004[PubMed]

24. Sangin P, Lindstrom AJ, Kokubugata G, Chaiprasongsuk M, Mingmuang M (2010) Phylogenetic relationships within Cycadaceae inferred from non-coding regions of chloroplast DNA. Kasetsart Journal: Natural Scie44: 544–557.

25. Xiao LQ, Möller M, Zhu H (2010) High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: Incomplete concerted evolution and the origin of pseudogenes. Mol Phylogenet Evol55: 168–77. doi: 10.1016/j.ympev.2009.11.020[PubMed]

26. Buckler ES, Ippolito A, Holtsford TP (1997) The evolution of ribosomal DNA: Divergent paralogous and phylogenetic implications. Genetics145: 821–832. [PMC free article][PubMed]

27. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, et al. (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Mo Bot Gard82: 247–277.

28. McDade LA (1992) Hybrids and phylogenetic systematics II. The impact of hybrids on cladistic analysis. Evolution46: 1329–1346.

29. Petrov DA, Hartl DL (2000) Pseudogene evolution and natural selection for a compact genome. J Hered3: 221–227. [PubMed]

30. Mai JC, Coleman AW (1997) The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. J Mol Evol44: 258–271. [PubMed]

31. Álvarez I, Wendel JF (2003) Ribosomal ITS sequences and plant phylogenetic inference. Mol Phylogenet Evol29: 417–434. [PubMed]

32. Zheng XY, Cai DY, Yao LH, Teng YW (2008) Non-concerted ITS evolution, early origin and phylogenetic utility of ITS pseudogenes in Pyrus. Mol Phylogenet Evol48: 892–903. doi: 10.1016/j.ympev.2008.05.039[PubMed]

33. Ochieng JW, Henry RJ, Baverstock PR, Steane DA, Shepherd M (2007) Nuclear ribosomal pseudogenes resolve a corroborated monophyly of the eucalypt genus Corymbia despite misleading hypotheses at functional ITS paralogs. Mol Phylogenet Evol44: 752–764. [PubMed]

34. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution39: 783–791.

35. Doyle J (1991) DNA protocols for plants—CTAB total DNA isolation In: Hewitt GM, Johnston A, editors. Molecular Techniques in Taxonomy. Berlin: Springer.

36. Jobes DV, Thien LB (1997) A conserved motif in the 5.8S Ribosomal RNA (rRNA) gene is a useful diagnostic marker for plant internal transcribed spacer (ITS) Sequences. Plant Mol Biol Rep15: 326–334.

37. Padidam M, Sawyer S, Fauquet CM (1999) Possible emergence of new geminiviruses by frequent recombination. Virology265: 218–225. [PubMed]

38. Simmons MP, Ochoterena H (2000) Gaps as characters in sequence based phylogenetic analyses. Syst Biol49: 369–381. [PubMed]

39. Müller K (2005) SeqState—primer design and sequence statistics for phylogenetic DNA data sets. Appl Bioinformatics4: 65–69. [PubMed]

40. Nylander JAA (2004) MrModeltest, version 2.2. Program distributed by the author. Uppsala University: Evolutionary Biology Centre.

41. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics22: 2688–2690. [PubMed]

42. Buckler ES, Holtsford TP (1996) Zea systematics: ribosomal ITS evidence. Mol Biol Evol13: 612–622. [PubMed]

43. Lewis PO, Holder MT, Holsinger KE (2005) Polytomies and Bayesian phylogenetic inference. Syst Biol54: 241–253. [PubMed]

44. Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics19: 1572–1574. [PubMed]

45. Yu Y, Harris AJ, He XJ (2014) RASP (Reconstruct Ancestral State in Phylogenies) 3.0. Available at http://mnh.scu.edu.cn/soft/blog/RASP.

46. Hill KD (1998) The Cycad Pages. Available: http://plantnet.rbgsyd.gov.au/PlantNet/cycad. Accessed 10 August 2012.

47. Chiang TY, Schaal BA (2006) Phylogeography of Plants in Taiwan and the Ryukyu Archipelago. Taxon55: 31–41.

48. Holloway NH (1982) North Palawan Bock, Philippines—Its relation to Asian Myainland and role in evolution of South China Sea. Am Assoc Pet Geol Bull66: 1355–1383.

49. Leloup PH, Lacassin R, Tapponnier P, Scharer U, Zhong DL, et al. (1995) The Ailao Shan—Red River shear zone (Yunnan China), Tertiary transform boundary of Indochina. Tectonophysics25: 3–84.

50. Tanaka (1954) Species problem in Citrus. Tokyo: Japanese Society for the Promotion of Scence.

51. Li XW, Li J (1997) The Tanaka-kaiyong Line—An important floristic line for the study of the flora of East Asia. Ann Mo Bot Gard84: 888–892.

52. Hall R (2009) Southeast Asia’s changing palaeogeography. Blumea, 54: 148–161.

53. Wei XX, Wang XQ (2004) Recolonization and radiation in Larix (Pinaceae), evidence from nuclear ribosomal DNA paralogs. Mol Ecol13: 3115–3123. [PubMed]

54. Harris DJ, Newman MF, Hollingsworth ML, Möller M, Clark A (2006) The phylogenetic position of Aulotandra (Zingiberaceae). Nord J Bot23: 725–734.

55. Bergsten J (2005) A review of long-branch attraction. Cladistics21: 163–193.

56. Graham SW, Olmstead RG, Barrett SCH (2002) Rooting phylogenetic trees with distant outgroups: a case study from the commelinoid monocots. Mol. Biol Evol19: 1769–1781. [PubMed]

57. Yang SL, Meerow AW (1996) The Cycas pectinata (Cycadaceae) complex: genetic structure and gene flow. Int J Plant Sci157: 468–483.

58. Keppel G, Hodgskiss PD, Plunkett GM (2008) Cycads in the insular South—west Pacific: dispersal or vicariance?J Biogeogr35: 1004–1015.

59. Griffith MP, Magellan TM, Tomlinson PB (2014) Variation in Leaflet Structure in Cycas (Cycadales: Cycadaceae): Does Anatomy Follow Phylogeny and Geography?Int J Plant Sci175: 241–255.

60. Wang WK, Schaal BA, Chiou YM, Murakami N, Ge XJ, et al. (2007) Diverse selective modes among orthologs/paralogs of the chalcone synthase (Chs) gene family of Arabidopsis thaliana and its relative A. halleri ssp. gemmifera. Mol Phylogenet Evol44: 503–520. [PubMed]

61. Hill KD (1996b) A taxonomical revision of the genus Cycas (Cycadaceae) in Australia . Telopea7: 1–63.

62. Wulff EV (1943) An Introduction to historical plant geography. Waltham: Chronic Botanic Company.

63. Liu YS, Zhou ZY, Li HM (1991) First discovery of Cycas fossil pinnae from the Eocene Guchengzi Formation Northeast China. Chinese Sci Bull22: 1758–1759.

64. Jones DL (1993) Cycads of the world. Chatswood NSW: Reed Books.

65. Wolfe JA (1997) Relations of environmental change to angiosperm evolution during the late Cretaceous and Tertiary In: Iwatsuki K, Raven PH, editors. Evolution and diversifi cation of land plants. Tokyo: Springer-Verlag; pp. 269–290.

66. Collinson ME, Fowler K, Boulter MC (1981) Floristic changes indicate a cooling climate in the Eocene of southern England. Nature291: 315–317.

67. Golonka J, Krobicki M, Pajak J, Giang NV, Zuchiewicz W (2006) Phanerozoic Palaeogeography of Southeast Asia. Geolines20: 40–43.

68. Dehgan B, Yuen CKKH (1983) Seed morphology in relation to dispersal, evolution and propagation of Cycas L. Bot Gaz144: 412–418.

69. Hill KD (1996a) Cycads in the Pacific In: Keast A, Miller SE, editors. The origin and evolution of Pacific Islands biotas, New Guinea to eastern Polynesia: patterns and processes. Amsterdam: SPB Academic Publishing, 267–274.

70. Schneider D, Wink M, Sporer F, Lounibos P (2002) Cycads: their evolution, toxins, herbivores and insect pollinators. Naturwissenschaften89: 281–294. [PubMed]

71. Che J, Zhou WW, Hu JS, Yan F, Papenfuss TJ, et al. (2010) Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia. Proc Natl Acad Sci USA107: 13765–13770. doi: 10.1073/pnas.1008415107[PMC free article][PubMed]

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